PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G110300.1
Common NamePOPTR_0003s10970g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 914aa    MW: 104719 Da    PI: 8.1831
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G110300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.14.6e-2698207191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek. 72 
                         +fY+eYAk+vGFs+ +++s++s+ +g++++++fvC+++g+++++++                   +++ r +++ ++t+Cka+++vk+++ 
  Potri.003G110300.1  98 SFYKEYAKSVGFSTITKASRRSRISGKFIDAKFVCTRYGTKRDTSTIelpqpvsnadaatslpvkRKRGRINQSWSKTDCKACMHVKRRQq 188
                         5***************************************99988879**************998888899******************99 PP

                FAR1  73 dgkwevtkleleHnHelap 91 
                         dg+w+v ++ +eHnHe++p
  Potri.003G110300.1 189 DGRWVVRSFIKEHNHEIFP 207
                         ****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-2498207IPR004330FAR1 DNA binding domain
PfamPF105512.7E-33326418IPR018289MULE transposase domain
PROSITE profilePS5096610.311605642IPR007527Zinc finger, SWIM-type
SMARTSM005759.2E-7617644IPR006564Zinc finger, PMZ-type
PfamPF044341.2E-6618640IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MGIDLEQPSG EYHKEDRRPN VNVNTVDGGD GGHERDQIIV NSPDIGGNGC EKTGTVINGR  60
VLDGRKKPNA GDGINLNSVK DAEPHDGMEF ESKDEAFSFY KEYAKSVGFS TITKASRRSR  120
ISGKFIDAKF VCTRYGTKRD TSTIELPQPV SNADAATSLP VKRKRGRINQ SWSKTDCKAC  180
MHVKRRQQDG RWVVRSFIKE HNHEIFPDQA YYFRGHRNLN LGNDNVDALH AIRARTKKLY  240
VAMSRQSSGH RKHENLKGGV TNPSGNTKHL ALDEGDAQAM LDHFMHMQDE NPNFFYAIDL  300
NEEQQLRNVF WVDAKGRLDY GNFGDVIFFD TTYLKNEYKL PFAPFIGVNH HFQFLLLGCA  360
LVADETKTTY VWLMRAWLRA MGGHAPRVIL TDQDNALKEA IQEVFPNSRH CFCLWHVFSK  420
IPEKLSYVTR QHENFMLKFK KCIFKSWTSE QFEKRWWKMV EIFNLRNDVW FQSLYEDRQR  480
WIPVFMIDNF LAGMSTTQRS ESINTLFDRY MQRKTTLKEF LELQKAMLQE KFEEEAKADF  540
ETWHKQPGLK SPSPFGKQMA SIYTHAIFKK FQVEVLGVVA CHPRKETEDG ETQTFKVQDF  600
EDNQYFIVVW NEMTSYLSCS CRLFEFNGFL CRHVLIVMQM SGLHSIPSQY ILKRWTKDAK  660
SRQIMREQSD VVESRVQRYN DLCRRAFKLG DEGSLSQESY NIAFNALEEA LRKCESVNNS  720
IQNIIEPTSP PSNGPLDYDE VNQAHGATKT NKKKDTSRKK QVHPDPEVIP IRMHDSWQQM  780
EQLNSRVPTL DGYFGSQQTG QGMGQLNAIA SSRDDCYSNP HSMQGLGQLN ATAPNDDAHY  840
MMQQRMQGMG QIQFRPQTIP SFFDVQDGLQ EMVFKVLLGL SGMVASIGYL HGGLTPISGL  900
IKSGILSVAW LGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385722.10.0hypothetical protein POPTR_0003s10970g
SwissprotQ9SWG30.0FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLU5GMV80.0U5GMV8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s10970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein